fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G26780 (LOF1, ATMYB117)

Alias LOF1, ATMYB117
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2)
TAIR annotation Encodes LOF1 (LATERAL ORGAN FUSION1), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF2 (At1g69560). (.1), Encodes LOF1 (LATERAL ORGAN FUSION1), a MYB-domain transcription factor expressed in organ boundaries. Functions in boundary specification, meristem initiation and maintenance, and organ patterning. Also see LOF2 (At1g69560). (.2)
Gene model
Gene model cDNA support
AT1G26780.1 6
AT1G26780.2 3
Entry clone (w/o stop) RE_1343
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10199: other biological processes ->organ boundary specification between lateral organs and the meristem
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 30154: other cellular processes ->cell differentiation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(P) 7275: developmental processes ->multicellular organism development
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 7 10
soybean 2 5 7
rice 1 1 2
sorghum 1 3 4
physcomitrella 2 5 7
Total 3 6 21 30
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
EIENRNLCLKLADEAQ at 84/378 in soybean Gm051835 (Type II)
ETLPKGLDLTLSNNAG at 231/378 in soybean Gm051835 (Type II)
KDSGSALKLGLSWVTS at 564/607 in physcomitrella Pp016289 (Type III)
IENNKNLCLKLGGDEA at 104/405 in soybean Gm005817 (Type III)
TVLPKGLNLTLSNNNA at 254/405 in soybean Gm005817 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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