fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT1G30135 (TIFY5A, JAZ8)
Alias
TIFY5A, JAZ8
TF Classification
FioreDB
ZIM
(Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDB
Tify
(v3.0), ZIM (v1.0)
DATF
ZIM
TAIR short description
jasmonate-zim-domain protein 8 (.1)
TAIR annotation
jasmonate-zim-domain protein 8 (JAZ8); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 7 (TAIR:AT2G34600.1); Has 89 Blast hits to 89 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT1G30135.1
5
Entry clone (w/o stop)
IE_0016
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(P) 1903507: other metabolic processes
->negative regulation of nucleic acid-templated transcription
(P) 2000022: signal transduction
->regulation of jasmonic acid mediated signaling pathway
(P) 31347: response to stress
->regulation of defense response
(F) 3714: other molecular functions
->transcription corepressor activity
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
(P) 6952: response to stress
->defense response
(P) 9611: response to stress
->response to wounding
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
soybean
1
1
rice
sorghum
physcomitrella
Total
1
1
Repression motif
LQQNC
DLELRL
FPTSY at 7/131 in AT1G30135.1
Repression motif
in putative orthologs
MRKNC
KLELRL
FPPSL at 6/134 in soybean
Gm012386
(Type Ib)
Status
Plasmid construction
-> not_yet
Plasmid construction
-> not_yet
Transformed
-> not_yet
T1 seed harvested
-> not_yet
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment