fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G30490 (ATHB9, PHV)

Alias ATHB9, PHV
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / REVOLUTA/INTERFASCICULAR FIBERLESS1
AtTFDBHomeobox / HD-Zip III
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1)
TAIR annotation Dominant PHV mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Has overlapping functions with PHABULOSA, REVOLUTA and CORONA/ATHB15 in patterning the apical portion of the embryo. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. (.1)
Gene model
Gene model cDNA support
AT1G30490.1 45
Entry clone (w/o stop) RE_0524_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10014: other biological processes ->meristem initiation
(P) 10072: developmental processes ->primary shoot apical meristem specification
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 80060: developmental processes ->integument development
(F) 8289: other binding ->lipid binding
(P) 9855: developmental processes ->determination of bilateral symmetry
(P) 9880: developmental processes ->embryonic pattern specification
(P) 9943: developmental processes ->adaxial/abaxial axis specification
(P) 9944: developmental processes ->polarity specification of adaxial/abaxial axis
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR165a: 3'-CCCCCTACTTCGGACCAGGCT-5'
5'--3'

miR165b: 3'-CCCCCTACTTCGGACCAGGCT-5'
5'--3'

miR166a: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166b: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166c: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166d: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166e: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166f: 3'-CCCCTTACTTCGGACCAGGCT-5'
5'--3'

miR166g: 3'-CCCCTTACTTCGGACCAGGCT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 8 9
soybean 1 14 15
rice 1 5 6
sorghum 1 4 5
physcomitrella 1 4 5
Total 5 35 40
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
GAHARQLDLHLTLRVS at 851/940 in sorghum Sb031905 (Type III)
AVNSDELNLALAHYAT at 102/1010 in physcomitrella Pp014242 (Type III)
VLRSYRLHLGLDLTRS at 876/1010 in physcomitrella Pp014242 (Type III)
QSYHYHLGLELLNQSD at 709/980 in sorghum Sb022478 (Type III)
VLSSYRLHLALDLTRP at 746/880 in physcomitrella Pp026644 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        Žq—tF•ªŒú‚­Œ`‚¢‚т‚ŗΐF”Z‚¢(9/24), bushy(11/43), –{—tF—ΔZ‚Å—t‚ª¬‚³‚­“à‘¤‚ÖƒJ[ƒ‹(8/43F–_ó(4/43),æ‚Æ‚ª‚è(14/43)), ‰ÔF¬‚³‚¢(11/43), ‰Ô•Ù’Z(8/43), ‰ÔŒsF—Z‡(10/43), ƒJƒEƒŠƒ“ƒŠ[ƒtFƒGƒAƒŠƒAƒ‹ƒƒ[ƒbƒg(8/43), ‚»‚Ì‘¼FŒÍŽ€”‘½‚¢(8/43), (phenotype_A20117:leaf_¶‰E”ñ‘ΏÌ/flower_¬‚³‚¢/silique_•Î•½/stem_dwarf/ƒGƒAƒŠƒAƒ‹ƒƒ[ƒbƒg/‘ç‚«/‰ÔŒs—Z‡/•s–«)(phenotype_A20129:leaf_—ΔZE‰º•Î¶’·‘å/flower_¬‚³‚¢/silique_•s–«/stem_—Z‡/dwarf/ƒƒ[ƒbƒgbushy)

         dark green leaf (A20129), 
         asynmetric cotyledon (direct input), 
         hyponastic leaf (A20129), 
         dwarf (A20117, A20129), 
         fused stem (A20117, A20129), 
         bushy (A20129), 
         abnormal shaped silique (A20117), 
         abnormal shaped leaf (A20117), 
         aerial rosette (A20117), 
         abnormal flower (A20117, A20129), 
         early flowering (A20117), 
         thickened cotyledon (direct input), 
         sterile or low fertility (A20117, A20129)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         hyponastic leaf 
         (A20779-196)
         

         hyponastic leaf 
         (A20750-8)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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