fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G32640 (JIN1, JAI1, ZBF1, RD22BP1, ATMYC2)

Alias JIN1, JAI1, ZBF1, RD22BP1, ATMYC2
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / TRANSPARENT TESTA8
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
TAIR annotation Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. (.1)
Gene model
Gene model cDNA support
AT1G32640.1 113
Entry clone (w/o stop) RE_0209_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(P) 2000068: response to stress ->regulation of defense response to insect
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 43619: other cellular processes ->regulation of transcription from RNA polymerase II promoter in response to oxidative stress
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(F) 46983: protein binding ->protein dimerization activity
(P) 48364: developmental processes ->root development
(P) 51090: other metabolic processes ->regulation of sequence-specific DNA binding transcription factor activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6568: other metabolic processes ->tryptophan metabolic process
(P) 9269: response to abiotic or biotic stimulus ->response to desiccation
(P) 9611: response to stress ->response to wounding
(P) 9737: other biological processes ->response to abscisic acid
(P) 9738: signal transduction ->abscisic acid-activated signaling pathway
(P) 9753: other biological processes ->response to jasmonic acid
(P) 9759: other metabolic processes ->indole glucosinolate biosynthetic process
(P) 9867: other cellular processes ->jasmonic acid mediated signaling pathway
(P) 9963: other metabolic processes ->positive regulation of flavonoid biosynthetic process
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 2 3
rice 1 1
sorghum 1 1
physcomitrella
Total 4 1 2 7
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
ISYINELKLKLNGLDS at 495/637 in soybean Gm000874 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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