fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G62990 (IXR11, KNAT7)

Alias IXR11, KNAT7
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / SHOOTMERISTEMLESS
AtTFDBHomeobox / KNOX II
PlnTFDBHB (v3.0), HB (v1.0)
DATF
TAIR short description KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1)
TAIR annotation Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46. (.1)
Gene model
Gene model cDNA support
AT1G62990.1 25
Entry clone (w/o stop) RE_0528_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10089: other biological processes ->xylem development
(P) 10192: other metabolic processes ->mucilage biosynthetic process
(P) 2000652: other cellular processes ->regulation of secondary cell wall biogenesis
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 3 14 18
rice 1 1 4 6
sorghum 1 1
physcomitrella 1 1 2
Total 3 6 23 32
Repression motif 
ERVRQELKLELKQGFK at 193/291 in AT1G62990.1
Repression motif
in putative orthologs		 
TFAGHRLRLSLRITVF at 344/444 in sorghum Sb009772 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo
short pedicel (direct input), bushy (direct input), abnormal shaped leaf (direct input)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project short pedicel, abnormal flower (A20684-48)
narrow leaf (A20500-32)
Phenotype in ornamental plants
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