fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G69170 (SPL6)

Alias SPL6
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
TAIR annotation Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 14 (TAIR:AT1G20980.1); Has 836 Blast hits to 835 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 834; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G69170.1 17
Entry clone (w/o stop) IE_04D06_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10468: other metabolic processes ->regulation of gene expression
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42742: response to abiotic or biotic stimulus ->defense response to bacterium
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR156a: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156b: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156c: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156d: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156e: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156f: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156g: 3'-CACGAGTGAGAGAAGACAGC-5'
5'--3'

miR156h: 3'-CACGAGAGAAAGAAGACAGTT-5'
5'--3'

miR156i: 3'-CACGAGAGAGAGAAGACAGTT-5'
5'--3'

miR156j: 3'-CACGAGAGAGAGAAGACAGT-5'
5'--3'

miR157a: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157b: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157c: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157d: 3'-CACGAGAGATAGAAGACAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice
sorghum
physcomitrella
Total 2 2
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         no visible phenotype (direct input)


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        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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