fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G75240 (ATHB33, ZHD5)

Alias ATHB33, ZHD5
TF Classification
FioreDBZF_HD (Click to show phylogenetic tree)
RARTF
AtTFDBZF-HD
PlnTFDBzf-HD (v3.0), zf-HD (v1.0)
DATFZF-HD
TAIR short description zinc-finger homeodomain 5, homeobox protein 33 (.1)
TAIR annotation homeobox protein 33 (HB33); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 24 (TAIR:AT2G18350.1); Has 705 Blast hits to 675 proteins in 76 species: Archae - 0; Bacteria - 8; Metazoa - 117; Fungi - 10; Plants - 549; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G75240.1 46
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: other cellular processes ->positive regulation of transcription, DNA-templated
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 9737: other biological processes ->response to abscisic acid
(P) 9738: other cellular processes ->abscisic acid-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5654: 3'-CCACCTTCTACAACCCTAAAT-5'
5'--3'

miR838: 3'-ACACGTTCTTCATCTTCTTTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 2 6
soybean 1 2 4 7
rice 1 1 2
sorghum 1 1 2
physcomitrella 1 1 2
Total 3 7 9 19
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment