fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G77850 (ARF17)

Alias ARF17
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDBARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description auxin response factor 17 (.1)
TAIR annotation Posttranscriptionally regulated by miR160 and is essential for proper development.Regulates early auxin response genes. (.1)
Gene model
Gene model cDNA support
AT1G77850.1 15
Entry clone (w/o stop) IE_07B05
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10208: developmental processes ->pollen wall assembly
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48830: developmental processes ->adventitious root development
(P) 52543: cell organization and biogenesis ->callose deposition in cell wall
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9555: developmental processes ->pollen development
(P) 9653: other biological processes ->anatomical structure morphogenesis
(P) 9734: signal transduction ->auxin-activated signaling pathway
(F) 987: DNA or RNA binding ->core promoter proximal region sequence-specific DNA binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR160a: 3'-ACCGTATGTCCCTCGGTCCGT-5'
5'--3'

miR160b: 3'-ACCGTATGTCCCTCGGTCCGT-5'
5'--3'

miR160c: 3'-ACCGTATGTCCCTCGGTCCGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice
sorghum
physcomitrella
Total 2 2 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
TEGVNALELSLTSSYT at 563/594 in poplar Pt038819 (Type II)
TEGVDALELSLTSSYT at 561/592 in poplar Pt002083 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(05Nov)

          
Plasmid construction -> The work interrupted(05Nov)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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