fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G01570 (RGA1)

Alias RGA1
TF Classification
FioreDBGRAS (Click to show phylogenetic tree)
RARTFGRAS / Repressor of ga-1
AtTFDBGRAS
PlnTFDBGRAS (v3.0), GRAS (v1.0)
DATFGRAS
TAIR short description REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
TAIR annotation Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development. (.1)
Gene model
Gene model cDNA support
AT2G01570.1 164
Entry clone (w/o stop) RE_0893_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10029: developmental processes ->regulation of seed germination
(P) 10187: developmental processes ->negative regulation of seed germination
(P) 10218: response to abiotic or biotic stimulus ->response to far red light
(P) 2000033: developmental processes ->regulation of seed dormancy process
(P) 2000377: other cellular processes ->regulation of reactive oxygen species metabolic process
(P) 33206: other cellular processes ->meiotic cytokinesis
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42176: other metabolic processes ->regulation of protein catabolic process
(P) 42538: response to abiotic or biotic stimulus ->hyperosmotic salinity response
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9651: response to stress ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9737: other biological processes ->response to abscisic acid
(P) 9740: signal transduction ->gibberellic acid mediated signaling pathway
(P) 9863: other cellular processes ->salicylic acid mediated signaling pathway
(P) 9867: signal transduction ->jasmonic acid mediated signaling pathway
(F) 989: other molecular functions ->transcription factor activity, transcription factor binding
(P) 9938: signal transduction ->negative regulation of gibberellic acid mediated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5021: 3'-GAGAAAAGAAGAAGAAGAAG-5'
5'--3'

miR5028: 3'-TTGAGATCGTATTTGGGTTAA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 1 5
soybean 1 3 4
rice 1 1
sorghum 1 1
physcomitrella
Total 2 5 4 11
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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