Alias |
ATIDD5 |
TF Classification |
|
TAIR short description |
indeterminate(ID)-domain 5 (.1) |
TAIR annotation |
indeterminate(ID)-domain 5 (IDD5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1); Has 61158 Blast hits to 25844 proteins in 587 species: Archae - 8; Bacteria - 480; Metazoa - 52168; Fungi - 1154; Plants - 982; Viruses - 10; Other Eukaryotes - 6356 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_0392_x |
External link |
|
Gene Ontology (GO) |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46872: other binding |
->metal ion binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
(F) 8270: other binding |
->zinc ion binding |
(C) 9507: chloroplast |
->chloroplast |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5' |
|
|
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Orthologs |
|
Repression motif |
|
Repression motif in putative orthologs |
HHSLLSLSLSLHNLSL at 23/856 in sorghum Sb031033 (Type Ia)
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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