| Alias |
|
| TF Classification |
| FioreDB | FHA (Click to show phylogenetic tree) |
| RARTF | |
| AtTFDB | |
| PlnTFDB | FHA (v3.0), FHA (v1.0) |
| DATF | FHA |
|
| TAIR short description |
SMAD/FHA domain-containing protein (.1) |
| TAIR annotation |
SMAD/FHA domain-containing protein ; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); Has 459 Blast hits to 455 proteins in 163 species: Archae - 26; Bacteria - 275; Metazoa - 3; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). (.1) |
| Gene model |
|
| Entry clone (w/o stop) |
|
| External link |
|
| Gene Ontology (GO) |
| (F) 5515: protein binding |
->protein binding |
| (C) 9507: chloroplast |
->chloroplast |
| (C) 9535: chloroplast |
->chloroplast thylakoid membrane |
| (C) 9570: other intracellular components |
->chloroplast stroma |
|
| miRNA/tasiRNA |
| Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
| miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5' |
|
 |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
|
1 |
|
|
1 |
| soybean |
1 |
|
|
|
1 |
| rice |
|
1 |
|
|
1 |
| sorghum |
|
1 |
|
|
1 |
| physcomitrella |
|
1 |
|
|
1 |
| Total |
1 |
4 |
|
|
5 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> not_yet |
| Plasmid construction | -> not_yet |
| Transformed | -> not_yet |
| T1 seed harvested | -> not_yet |
| T2 seed harvested | -> not_yet |
|
| CRES-T phenotype from individual project
|
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
| Comment |
|
