fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G22800 (HAT9)

Alias HAT9
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description Homeobox-leucine zipper protein family (.1)
TAIR annotation Encodes homeobox protein HAT9. (.1)
Gene model
Gene model cDNA support
AT2G22800.1 16
Entry clone (w/o stop) RE_0540_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 12 13
soybean 1 16 17
rice
sorghum 1 3 4
physcomitrella 1 2 3
Total 4 33 37
Repression motif
YKLEPSLTLCLSGDPS at 38/274 in AT2G22800.1
Repression motif
in putative orthologs
PPNEPSLTLGLSGESY at 56/283 in soybean Gm002000 (Type III)
MELALSLGDTSK at 2/327 in soybean Gm024629 (Type III)
KDDEFGLSLSLSLGGV at 9/289 in soybean Gm050338 (Type III)
PSKEPSLTLGLSGKGY at 55/283 in soybean Gm029825 (Type II)
MVQKEDLGLSLSLNFP at 7/299 in soybean Gm047093 (Type III)
MELRLSLGEAAV at 2/377 in sorghum Sb015943 (Type III)
RAAVPELGLGLGVGIG at 22/377 in sorghum Sb015943 (Type III)
NKREMELGLSLGDAAT at 8/383 in poplar Pt022588 (Type III)
SEAEPSLTLGLSRESY at 67/310 in soybean Gm047226 (Type III)
MVQKEDLGLSLSLNFP at 7/296 in soybean Gm011449 (Type III)
SEAEPSLTLGLSRESY at 67/312 in soybean Gm047225 (Type III)
GDKNDGLGLSLSLGYA at 7/295 in poplar Pt040049 (Type III)
HHQQPSLKLNLMPLAS at 27/295 in poplar Pt040049 (Type III)
MELGLSLGDSSR at 2/384 in soybean Gm043292 (Type III)
MELALSLGDTSK at 2/344 in poplar Pt043918 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011704 (Type III)
ARRRCSLHLSLLRAHR at 244/292 in sorghum Sb021052 (Type III)
DLCNTGLGLGLGSFHA at 14/269 in poplar Pt040388 (Type III)
TVEKEDLGLSLSLSFP at 7/285 in soybean Gm029715 (Type III)
QNPPTHLHLNLVSSSP at 23/285 in soybean Gm029715 (Type III)
GDKNDGLGLSLSLGFD at 7/298 in poplar Pt017318 (Type III)
HQQQPSLKLNLMPVPS at 28/298 in poplar Pt017318 (Type III)
MELGLSLGDAAT at 2/374 in poplar Pt031227 (Type III)
GEKDDGLGLGLSLKLG at 7/308 in soybean Gm018184 (Type III)
MELALSLGDTSK at 2/294 in poplar Pt006139 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011705 (Type III)
MELALSLGDTSK at 2/309 in soybean Gm004319 (Type III)
MELALSLGDTPK at 2/270 in soybean Gm052144 (Type III)
TGFEPSLSLGLSAETY at 51/273 in poplar Pt037290 (Type II)
MELALSLGDTPK at 2/280 in soybean Gm007056 (Type III)
HLDDAGLALGLSLGGG at 13/501 in sorghum Sb021965 (Type III)
MELGLSLGETMA at 2/369 in sorghum Sb005998 (Type II)
MVQKEDLGLSLSLNFP at 7/298 in soybean Gm011448 (Type III)
MAGKEDLGLSLSLSVP at 7/302 in poplar Pt032091 (Type III)
QNQHSLQLNLMPSLV at 22/302 in poplar Pt032091 (Type III)
SEAEPSLTLGLSRESY at 62/305 in soybean Gm012051 (Type III)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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