| Alias |
STH |
| TF Classification |
| FioreDB | CO (Click to show phylogenetic tree) |
| RARTF | C2C2(Zn) / CO-like |
| AtTFDB | |
| PlnTFDB | Orphans (v3.0), Orphans (v1.0) |
| DATF | |
|
| TAIR short description |
salt tolerance homologue (.1) |
| TAIR annotation |
a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. (.1) |
| Gene model |
|
| Entry clone (w/o stop) |
RE_1091 |
| External link |
|
| Gene Ontology (GO) |
| (P) 10100: developmental processes |
->negative regulation of photomorphogenesis |
| (F) 19904: protein binding |
->protein domain specific binding |
| (F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
| (F) 5515: protein binding |
->protein binding |
| (C) 5634: nucleus |
->nucleus |
| (P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
| (P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
| (F) 8270: other binding |
->zinc ion binding |
| (F) 989: other molecular functions |
->transcription factor activity, transcription factor binding |
|
| miRNA/tasiRNA |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
|
|
1 |
|
1 |
| soybean |
|
|
1 |
3 |
4 |
| rice |
|
|
1 |
|
1 |
| sorghum |
|
|
1 |
1 |
2 |
| physcomitrella |
|
|
|
|
|
| Total |
|
|
4 |
4 |
8 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> done |
| Plasmid construction | -> done |
| Transformed | -> done |
| T1 seed harvested | -> done |
| T2 seed harvested | -> done |
|
| CRES-T phenotype from individual project
|
long hypocotyl (direct input)
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
long hypocotyl
(A50083-3)
long hypocotyl
(A50083-4)
long hypocotyl
(A106911-4)
long hypocotyl
(A106911-3)
long hypocotyl
(A20090-3)
|
Phenotype in ornamental plants
|
|
| Comment |
|
