fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT2G33500 (COL14)
Alias
COL14
TF Classification
FioreDB
CO
(Click to show phylogenetic tree)
RARTF
C2C2(Zn)
/ CO-like
AtTFDB
C2C2-CO-like
PlnTFDB
C2C2-CO-like
(v3.0), C2C2-CO-like (v1.0)
DATF
C2C2-CO-like
TAIR short description
B-box type zinc finger protein with CCT domain (.1.2)
TAIR annotation
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3455 Blast hits to 2237 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 3332; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT2G33500.2
44
AT2G33500.1
42
Entry clone (w/o stop)
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(P) 6355: other cellular processes
->regulation of transcription, DNA-templated
(F) 8270: other binding
->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
rice
sorghum
physcomitrella
Total
1
1
Repression motif
Repression motif
in putative orthologs
ASIWG
FDLEEKKP
EPLIE at 117/444 in poplar
Pt031633
(Type II)
Status
Plasmid construction
-> The work interrupted(07Feb)
Plasmid construction
-> The work interrupted(07Feb)
Transformed
-> not_yet
T1 seed harvested
-> not_yet
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment