Alias |
|
TF Classification |
FioreDB | AT-hook (Click to show phylogenetic tree) |
RARTF | AT-hook |
AtTFDB | |
PlnTFDB | |
DATF | |
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TAIR short description |
AT hook motif DNA-binding family protein (.1.2.3.4) |
TAIR annotation |
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 969 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 205; Metazoa - 5; Fungi - 3; Plants - 754; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_0925_x |
External link |
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Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(C) 5634: nucleus |
->nucleus |
(C) 5829: cytosol |
->cytosol |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: other cellular processes |
->regulation of transcription, DNA-templated |
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miRNA/tasiRNA |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
1 |
|
1 |
soybean |
|
|
|
|
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rice |
|
|
1 |
2 |
3 |
sorghum |
|
|
1 |
|
1 |
physcomitrella |
|
|
|
|
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Total |
|
|
3 |
2 |
5 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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