fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G41240 (bHLH100)

Alias bHLH100
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / TRANSPARENT TESTA8
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description basic helix-loop-helix protein 100 (.1.2)
TAIR annotation Encodes a member of the basic helix-loop-helix transcription factor family protein. (.1), Encodes a member of the basic helix-loop-helix transcription factor family protein. (.2)
Gene model
Gene model cDNA support
AT2G41240.1 5
AT2G41240.2 1
Entry clone (w/o stop) IE_02E07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10106: response to stress ->cellular response to iron ion starvation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(P) 55072: other biological processes ->iron ion homeostasis
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6357: other cellular processes ->regulation of transcription from RNA polymerase II promoter
(C) 90575: nucleus ->RNA polymerase II transcription factor complex
(P) 9414: response to stress ->response to water deprivation
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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