fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G42200 (SPL9, AtSPL9)

Alias SPL9, AtSPL9
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description squamosa promoter binding protein-like 9 (.1)
TAIR annotation Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. SPL activity nonautonomously inhibits initiation of new leaves at the shoot apical meristem. (.1)
Gene model
Gene model cDNA support
AT2G42200.1 27
Entry clone (w/o stop) RE_0968_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10228: developmental processes ->vegetative to reproductive phase transition of meristem
(P) 2000025: developmental processes ->regulation of leaf formation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(P) 48366: developmental processes ->leaf development
(P) 48653: developmental processes ->anther development
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR156a: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156b: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156c: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156d: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156e: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156f: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156g: 3'-CACGAGTGAGAGAAGACAGC-5'
5'--3'

miR156h: 3'-CACGAGAGAAAGAAGACAGTT-5'
5'--3'

miR156i: 3'-CACGAGAGAGAGAAGACAGTT-5'
5'--3'

miR156j: 3'-CACGAGAGAGAGAAGACAGT-5'
5'--3'

miR157a: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157b: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157c: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157d: 3'-CACGAGAGATAGAAGACAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella
Total 3 3
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
AHFSGELELALQGNGP at 382/417 in rice Os032080 (Type Ib)
GHFSGELELALQGSGP at 348/388 in sorghum Sb006153 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        



 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         narrow leaf 
         (A20232-64)
         

         
         

         dwarf 
         (A20090-16)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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