fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G43010 (SRL2, PIF4, AtPIF4)

Alias SRL2, PIF4, AtPIF4
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / LONG HYPOCOTYL IN FAR-RED1
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description phytochrome interacting factor 4 (.1.2)
TAIR annotation Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. (.1), Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. (.2)
Gene model
Gene model cDNA support
AT2G43010.1 42
AT2G43010.2 30
Entry clone (w/o stop) IE_04F08_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10017: other cellular processes ->red or far-red light signaling pathway
(P) 10161: response to abiotic or biotic stimulus ->red light signaling pathway
(P) 10244: response to abiotic or biotic stimulus ->response to low fluence blue light stimulus by blue low-fluence system
(P) 10600: other cellular processes ->regulation of auxin biosynthetic process
(P) 10928: signal transduction ->regulation of auxin mediated signaling pathway
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9585: signal transduction ->red, far-red light phototransduction
(P) 9704: developmental processes ->de-etiolation
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice 1 1
sorghum
physcomitrella
Total 1 1
Repression motif 
IDYLKSLQLQLQVMWM at 304/430 in AT2G43010.1
IDYLKSLQLQLQVMWM at 304/428 in AT2G43010.2
Repression motif
in putative orthologs		 
IEYLKSLQLQLQMMWM at 317/445 in rice Os041835 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment