fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G02380 (ATCOL2, COL2)

Alias ATCOL2, COL2
TF Classification
FioreDBCO (Click to show phylogenetic tree)
RARTFC2C2(Zn) / CO-like
AtTFDBC2C2-CO-like
PlnTFDBC2C2-CO-like (v3.0), C2C2-CO-like (v1.0)
DATFC2C2-CO-like
TAIR short description CONSTANS-like 2 (.1)
TAIR annotation homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins (.1)
Gene model
Gene model cDNA support
AT3G02380.1 60
Entry clone (w/o stop) RE_02D04_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
(P) 9658: cell organization and biogenesis ->chloroplast organization
(P) 9909: developmental processes ->regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 3 4
rice 1 1
sorghum 1 1
physcomitrella
Total 3 1 5 9
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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