| Alias |
|
| TF Classification |
| FioreDB | AT-hook (Click to show phylogenetic tree) |
| RARTF | AT-hook |
| AtTFDB | |
| PlnTFDB | |
| DATF | |
|
| TAIR short description |
AT hook motif DNA-binding family protein (.1.2) |
| TAIR annotation |
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT2G33620.4); Has 3258 Blast hits to 2940 proteins in 204 species: Archae - 0; Bacteria - 25; Metazoa - 1636; Fungi - 293; Plants - 789; Viruses - 3; Other Eukaryotes - 512 (source: NCBI BLink). (.1) |
| Gene model |
|
| Entry clone (w/o stop) |
|
| External link |
|
| Gene Ontology (GO) |
| (F) 3677: DNA or RNA binding |
->DNA binding |
|
| miRNA/tasiRNA |
| Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
| miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5' |
|
 |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
|
1 |
|
|
1 |
| soybean |
1 |
|
3 |
|
4 |
| rice |
|
|
|
|
|
| sorghum |
|
|
|
|
|
| physcomitrella |
|
|
|
|
|
| Total |
1 |
1 |
3 |
|
5 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> The work interrupted(07Feb) |
| Plasmid construction | -> The work interrupted(07Feb) |
| Transformed | -> not_yet |
| T1 seed harvested | -> not_yet |
| T2 seed harvested | -> not_yet |
|
| CRES-T phenotype from individual project
|
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
| Comment |
|
