Alias |
|
TF Classification |
FioreDB | C2H2ZnF (Click to show phylogenetic tree) |
RARTF | C2H2(Zn) / InterPro C2H2 |
AtTFDB | C2H2 |
PlnTFDB | |
DATF | |
|
TAIR short description |
C2H2 and C2HC zinc fingers superfamily protein (.1.2) |
TAIR annotation |
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); Has 718 Blast hits to 676 proteins in 204 species: Archae - 2; Bacteria - 14; Metazoa - 302; Fungi - 150; Plants - 49; Viruses - 2; Other Eukaryotes - 199 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_03C09 |
External link |
|
Gene Ontology (GO) |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(C) 5634: nucleus |
->nucleus |
(F) 8270: other binding |
->zinc ion binding |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miR838: 3'-ACACGTTCTTCATCTTCTTTT-5' |
|
|
5'--3'
|
miR847: 3'-GTAGTTCTTCTTCTCCTCACT-5' |
|
|
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
1 |
|
1 |
|
2 |
soybean |
1 |
|
3 |
|
4 |
rice |
1 |
|
|
|
1 |
sorghum |
1 |
|
|
|
1 |
physcomitrella |
1 |
|
2 |
|
3 |
Total |
5 |
|
6 |
|
11 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
|