fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G54810 (GATA8, BME3, BME3-ZF)

Alias GATA8, BME3, BME3-ZF
TF Classification
FioreDBGATA (Click to show phylogenetic tree)
RARTFC2C2(Zn) / GATA
AtTFDBC2C2-Gata
PlnTFDBC2C2-GATA (v3.0), C2C2-GATA (v1.0)
DATFC2C2-GATA
TAIR short description GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
TAIR annotation Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. (.1.2)
Gene model
Gene model cDNA support
AT3G54810.2 50
AT3G54810.1 40
Entry clone (w/o stop) RE_03E04_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1085: protein binding ->RNA polymerase II transcription factor binding
(F) 1228: transcription factor activity ->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
(P) 30154: other cellular processes ->cell differentiation
(F) 3682: other binding ->chromatin binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(C) 5667: other intracellular components ->transcription factor complex
(P) 7623: other biological processes ->circadian rhythm
(F) 8270: other binding ->zinc ion binding
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9845: developmental processes ->seed germination
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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