fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G16780 (ATHB2, HAT4, ATHB-2)

Alias ATHB2, HAT4, ATHB-2
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
TAIR annotation Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin. (.1)
Gene model
Gene model cDNA support
AT4G16780.1 30
Entry clone (w/o stop) RE_0559
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10016: developmental processes ->shoot system morphogenesis
(P) 10017: response to abiotic or biotic stimulus ->red or far-red light signaling pathway
(P) 10218: response to abiotic or biotic stimulus ->response to far red light
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(P) 48364: developmental processes ->root development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 8283: other biological processes ->cell proliferation
(P) 9585: response to abiotic or biotic stimulus ->red, far-red light phototransduction
(P) 9641: response to abiotic or biotic stimulus ->shade avoidance
(P) 9733: other biological processes ->response to auxin
(P) 9735: other biological processes ->response to cytokinin
(P) 9826: other cellular processes ->unidimensional cell growth
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 4 7
soybean 1 3 5 9
rice 1 1 2
sorghum 1 3 4
physcomitrella 1 3 4
Total 4 9 13 26
Repression motif
MFEKDDLGLSLGLNFP at 6/284 in AT4G16780.1
Repression motif
in putative orthologs
MVQKEDLGLSLSLNFP at 7/298 in soybean Gm011448 (Type II)
MELRLSLGEAAV at 2/377 in sorghum Sb015943 (Type III)
RAAVPELGLGLGVGIG at 22/377 in sorghum Sb015943 (Type III)
MAGKEDLGLSLSLSVP at 7/302 in poplar Pt032091 (Type II)
QNQHSLQLNLMPSLV at 22/302 in poplar Pt032091 (Type II)
MELALSLGDTSK at 2/327 in soybean Gm024629 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011704 (Type II)
MERVEDLGLSLSLSSS at 68/363 in sorghum Sb029730 (Type III)
MELALSLGDTSK at 2/294 in poplar Pt006139 (Type III)
MVQKEDLGLSLSLNFP at 7/299 in soybean Gm047093 (Type Ia)
MELGLSLGETMA at 2/369 in sorghum Sb005998 (Type III)
MERAEDLRLSLSLSSP at 7/247 in rice Os018327 (Type Ia)
GEKDDGLGLGLSLKLG at 7/308 in soybean Gm018184 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011705 (Type Ia)
MVQKEDLGLSLSLNFP at 7/296 in soybean Gm011449 (Type II)
TVEKEDLGLSLSLSFP at 7/285 in soybean Gm029715 (Type II)
QNPPTHLHLNLVSSSP at 23/285 in soybean Gm029715 (Type II)
GDKNDGLGLSLSLGYA at 7/295 in poplar Pt040049 (Type III)
HHQQPSLKLNLMPLAS at 27/295 in poplar Pt040049 (Type III)
MELALSLGDTSK at 2/344 in poplar Pt043918 (Type III)
DGDDNHLGLGLSLSLG at 88/511 in sorghum Sb021157 (Type II)
YCPSSCLGLDLSFFFA at 435/511 in sorghum Sb021157 (Type II)
DEQYGGLRLGLGLGLS at 15/311 in rice Os037033 (Type III)
MELGLSLGDSSR at 2/384 in soybean Gm043292 (Type III)
GDKNDGLGLSLSLGFD at 7/298 in poplar Pt017318 (Type III)
HQQQPSLKLNLMPVPS at 28/298 in poplar Pt017318 (Type III)
KDDEFGLSLSLSLGGV at 9/289 in soybean Gm050338 (Type III)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo
Žq—t‚ªƒKƒ‰ƒX‰»‚µŒ`‚ª‚¢‚Ñ‚Â(18/51), Žq—t‚ª‹É‚½‚ñ‚ɉº‚(10/75), –{—t‚ׂ͍­‚Äbushy(11/71), ’¸‚½‚ñ‚̉Ԃª—Z‡(8/71), ‚ª‚­‚ª‘΂Ì2–‡‚Ì‚Ý’·‚¢, ‚‚ڂ݂ªŽOŠp(29/71), ‚³‚â‚É‹È‚ª‚è—L(9/71), ‰ÔŒs‚ªŽåŽ²‚æ‚è˜e‰è‚Ì‚Ù‚¤‚ª’·‚¢(’¸‰è—D¨Žã‚¢)(52/71), (phenotype_A20010,A20016:leaf_×‚­‚Äbushy/flower_‚ª‚­ˆê‘΂̂ݒ·‚¢E‚‚ڂݎOŠp/silique_‹È‚ª‚è/stem_‘½‚¢/•s–«/ŽíŽq‚܂΂ç/dwarf/’¸‰Ô—Z‡)
abnormal shaped silique (A20010, A20016), dwarf (A20010, A20016), asynmetric cotyledon (direct input), loss of apical dominance (direct input, A20010, A20016), abnormal sepal (A20343), narrow leaf (A20010, A20016, A20343), bushy (A20010, A20016), sterile or low fertility (A20010, A20016), abnormal flower (direct input, A20010, A20016)
CRES-T phenotype from publication
CRES-T phenotype from bulk project narrow leaf (A20090-24)

Phenotype in ornamental plants

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