fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G32010 (HSL1, HSI2-L1, VAL2)

Alias HSL1, HSI2-L1, VAL2
TF Classification
FioreDBB3 (Click to show phylogenetic tree)
RARTFARF / ETTIN/ARF3
AtTFDBABI3VP1
PlnTFDBABI3VP1 (v3.0), ABI3VP1 (v1.0)
DATFABI3-VP1
TAIR short description VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
TAIR annotation HSI2-like 1 (HSL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: high-level expression of sugar-inducible gene 2 (TAIR:AT2G30470.1); Has 1397 Blast hits to 1364 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 1204; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G32010.1 27
Entry clone (w/o stop) IE_0057
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10030: developmental processes ->positive regulation of seed germination
(P) 2000034: developmental processes ->regulation of seed maturation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 1 3
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 3 1 3 1 8
Repression motif 
AAGENIDLNSDPGASRV at 707/780 in AT4G32010.1
Repression motif
in putative orthologs		 
PVKGAIDLNIQPDHEER at 746/928 in physcomitrella Pp034991 (Type Ib)
INKGHIDLNFHPTAVRD at 836/949 in rice Os029607 (Type II)
SGKGHLDLNCHPGREED at 818/917 in poplar Pt043564 (Type Ia)
IDSQDALELKLTWEEA at 410/783 in soybean Gm001358 (Type Ia)
AAKGQLDLNCQPDREDV at 684/783 in soybean Gm001358 (Type Ia)
SGKGHLDLNCHPDREED at 781/880 in poplar Pt006127 (Type II)
IDSQDALELKLTWEEA at 464/865 in soybean Gm006084 (Type II)
AAKGQLDLNCQPDREDV at 745/865 in soybean Gm006084 (Type II)
LGTWEGLSLGLKVHSH at 220/1009 in sorghum Sb024340 (Type Ia)
TSAGQIDLNCHPNREDM at 706/786 in poplar Pt013678 (Type III)
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment