fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G32040 (KNAT5)

Alias KNAT5
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / SHOOTMERISTEMLESS
AtTFDBHomeobox / KNOX II
PlnTFDBHB (v3.0), HB (v1.0)
DATF
TAIR short description KNOTTED1-like homeobox gene 5 (.1)
TAIR annotation A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. (.1)
Gene model
Gene model cDNA support
AT4G32040.1 55
Entry clone (w/o stop) RE_0562_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 71369: other cellular processes ->cellular response to ethylene stimulus
(P) 9727: other biological processes ->detection of ethylene stimulus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 17 18
rice 1 3 4
sorghum 1 1
physcomitrella 1 1 2
Total 5 25 30
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
TFAGHRLRLSLRITVF at 344/444 in sorghum Sb009772 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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