fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G37650 (SGR7, SHR)

Alias SGR7, SHR
TF Classification
FioreDBGRAS (Click to show phylogenetic tree)
RARTFGRAS / SHORT-ROOT
AtTFDBGRAS
PlnTFDBGRAS (v3.0), GRAS (v1.0)
DATFGRAS
TAIR short description SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
TAIR annotation Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. (.1)
Gene model
Gene model cDNA support
AT4G37650.1 32
Entry clone (w/o stop) IE_05B03_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 32350: other metabolic processes ->regulation of hormone metabolic process
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45930: other cellular processes ->negative regulation of mitotic cell cycle
(P) 48366: developmental processes ->leaf development
(C) 55037: other cytoplasmic components ->recycling endosome
(P) 55072: other biological processes ->iron ion homeostasis
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5769: other intracellular components ->early endosome
(C) 5770: other intracellular components ->late endosome
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 8356: other cellular processes ->asymmetric cell division
(P) 9956: developmental processes ->radial pattern formation
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 5 6
rice 1 1 2
sorghum 1 1 2
physcomitrella 1 1 2
Total 5 10 15
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
FPQVDIDLDFSSPASSSG at 205/664 in sorghum Sb001825 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

         abnormal root (direct input), 
         serrated leaf (direct input), 
         short root (direct input), 
         narrow leaf (direct input), 
         too many roothairs (direct input), 
         loss of apical dominance (direct input), 
         abnormal shaped leaf (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         serrated leaf 
         (A20604-69)
         

         abnormal shaped leaf 
         (A20270-122)
         

         
         


        		
       

       

        Phenotype in ornamental plants


        
         

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