fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G03740 (HD2C, HDT3)

Alias HD2C, HDT3
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description HISTONE DEACETYLASE 3, histone deacetylase 2C (.1)
TAIR annotation HD2-type histone deacetylase HDAC. Involved in the ABA and stress responses. Mediates transcriptional repression (.1)
Gene model
Gene model cDNA support
AT5G03740.1 77
Entry clone (w/o stop) RE_03C11
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 16569: cell organization and biogenesis ->covalent chromatin modification
(F) 16787: hydrolase activity ->hydrolase activity
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 4407: other enzyme activity ->histone deacetylase activity
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(C) 5730: nucleus ->nucleolus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(F) 8270: other binding ->zinc ion binding
(P) 9414: response to stress ->response to water deprivation
(P) 9651: response to stress ->response to salt stress
(P) 9737: other biological processes ->response to abscisic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean 1 1
rice
sorghum
physcomitrella
Total 1 1
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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