fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G07060 (MAC5C)

Alias MAC5C
TF Classification
FioreDBC3HZnF (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBC3H (v3.0), C3H (v1.0)
DATFC3H
TAIR short description MOS4-associated complex subunit 5C, CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2)
TAIR annotation CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT1G07360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G07060.1 3
AT5G07060.2 0
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 17070: DNA or RNA binding ->U6 snRNA binding
(F) 36002: DNA or RNA binding ->pre-mRNA binding
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3723: DNA or RNA binding ->RNA binding
(P) 387: other cellular processes ->spliceosomal snRNP assembly
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(C) 71006: nucleus ->U2-type catalytic step 1 spliceosome
(C) 71007: nucleus ->U2-type catalytic step 2 spliceosome
(C) 974: other cellular components ->Prp19 complex
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 3 4
rice 1 1 2
sorghum 1 1 2
physcomitrella 1 1 2
Total 5 7 12
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
CQVCLLDLEYGLPVQVRD at 85/482 in soybean Gm038559 (Type II)
KLVIKGLRLKLMWGRP at 291/482 in soybean Gm038559 (Type II)
CQVCLLDLEYGLPVQVRD at 85/484 in soybean Gm005631 (Type III)
KLVIKGLRLKLMWGRP at 291/484 in soybean Gm005631 (Type III)
CQVCLLDLEYGLPVQVRD at 85/474 in physcomitrella Pp017906 (Type II)
KLVINGLRLKLMWGRP at 291/474 in physcomitrella Pp017906 (Type II)
CQVCLLDLEYGLPVQVRD at 85/428 in physcomitrella Pp020977 (Type III)
CQVCLLDLEYGLPVQVRD at 85/482 in rice Os023773 (Type II)
CQVCLLDLEYGLPVQVRD at 127/580 in sorghum Sb027791 (Type III)
CQVCLLDLEYGLPVQVRD at 85/467 in soybean Gm034934 (Type III)
KLVIKGLRLKLMWGRP at 291/467 in soybean Gm034934 (Type III)
CQVCLLDLEYGLPVQVRD at 85/481 in soybean Gm053844 (Type III)
KLVIKGLRLKLMWGRP at 291/481 in soybean Gm053844 (Type III)
CQVCLLDLEYGLPVQVRD at 85/531 in poplar Pt022032 (Type II)
RLVIKGLRLKLMWGRP at 291/531 in poplar Pt022032 (Type II)
CQVCLLDLEYGLPVQVRD at 85/486 in rice Os027668 (Type III)
CQVCLLDLEYGLPVQVRD at 85/531 in poplar Pt020818 (Type III)
RLVIKGLRLKLMWGRP at 291/531 in poplar Pt020818 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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