fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G09460 (bHLH143)

Alias bHLH143
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / LONG HYPOCOTYL IN FAR-RED1
AtTFDBbHLH
PlnTFDB
DATF
TAIR short description sequence-specific DNA binding transcription factors;transcription regulators (.1)
TAIR annotation sequence-specific DNA binding transcription factors;transcription regulators; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G64340.1); Has 178 Blast hits to 178 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 1; Plants - 159; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G09460.1 98
Entry clone (w/o stop) RE_0278 RE_03F12_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR838: 3'-ACACGTTCTTCATCTTCTTTT-5'
5'--3'

miRN131: 3'-ACCACGCCACTCGCACCTAGC-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean
rice
sorghum
physcomitrella
Total 1 1
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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