fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G16560 (KAN1, KAN)

Alias KAN1, KAN
TF Classification
FioreDBGARP (Click to show phylogenetic tree)
RARTFGARP / G2-like
AtTFDBG2-like
PlnTFDBG2-like (v3.0), G2-like (v1.0)
DATFGARP-G2-like
TAIR short description KANADI 1, KANADI, Homeodomain-like superfamily protein (.1)
TAIR annotation Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis. (.1)
Gene model
Gene model cDNA support
AT5G16560.1 18
Entry clone (w/o stop) RE_0877_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10051: developmental processes ->xylem and phloem pattern formation
(P) 10158: other cellular processes ->abaxial cell fate specification
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(P) 48440: developmental processes ->carpel development
(P) 48481: developmental processes ->plant ovule development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9887: developmental processes ->animal organ morphogenesis
(P) 9943: developmental processes ->adaxial/abaxial axis specification
(P) 9944: developmental processes ->polarity specification of adaxial/abaxial axis
(P) 9956: developmental processes ->radial pattern formation
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 5 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         abnormal flower (direct input), 
         abnormal phyllotaxis (direct input), 
         abnormal petal (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         abnormal flower, 
         fasciated stem 
         (A20718-233)
         


        		
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID18
           Pharbitis
           35S:AtCDS-SRDX
           2005-07-28
            
           serrated petal 
[Publication link]		
           and more...
          

          

           ID178
           Gentiana
           rolCpro:AtCDS-SRDX
           2007-02-22
            
           No phenotype 
            
          

          

           ID593
           Rosa
           35S:AtCDS-SRDX
           2008-10-01
            
           rough leaf surface 
           
          

          

           ID50105
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, 1 line 
           (dead) 
            
          

         

         

          Comment