fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT5G22990
Alias
TF Classification
FioreDB
C2H2ZnF
(Click to show phylogenetic tree)
RARTF
C2H2(Zn)
/ InterPro C2H2
AtTFDB
C2H2
PlnTFDB
C2H2
(v3.0), C2H2 (v1.0)
DATF
C2H2
TAIR short description
C2H2-like zinc finger protein (.1)
TAIR annotation
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G15740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT5G22990.1
0
Entry clone (w/o stop)
IE_06H04(09C08)
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding
->nucleic acid binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus
->nucleus
(P) 6355: other cellular processes
->regulation of transcription, DNA-templated
(F) 8270: other binding
->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
soybean
1
1
rice
sorghum
physcomitrella
Total
1
1
Repression motif
Repression motif
in putative orthologs
SNFST
ALSLGL
ASNTN at 14/325 in soybean
Gm029261
(Type Ib)
Status
Plasmid construction
-> not_yet
Plasmid construction
-> not_yet
Transformed
-> not_yet
T1 seed harvested
-> not_yet
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment