fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G43270 (SPL2)

Alias SPL2
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description squamosa promoter binding protein-like 2 (.1.2.3)
TAIR annotation member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. (.1), member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. (.2), member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase. (.3)
Gene model
Gene model cDNA support
AT5G43270.2 20
AT5G43270.1 18
AT5G43270.3 15
Entry clone (w/o stop) RE_0972_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 16021: other membranes ->integral component of membrane
(P) 16567: other cellular processes ->protein ubiquitination
(F) 16874: other enzyme activity ->ligase activity
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(F) 4842: other enzyme activity ->ubiquitin-protein transferase activity
(P) 48510: other biological processes ->regulation of timing of transition from vegetative to reproductive phase
(P) 48653: developmental processes ->anther development
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6996: cell organization and biogenesis ->organelle organization
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR156a: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156b: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156c: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156d: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156e: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156f: 3'-CACGAGTGAGAGAAGACAGT-5'
5'--3'

miR156g: 3'-CACGAGTGAGAGAAGACAGC-5'
5'--3'

miR156h: 3'-CACGAGAGAAAGAAGACAGTT-5'
5'--3'

miR156i: 3'-CACGAGAGAGAGAAGACAGTT-5'
5'--3'

miR156j: 3'-CACGAGAGAGAGAAGACAGT-5'
5'--3'

miR157a: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157b: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157c: 3'-CACGAGAGATAGAAGACAGTT-5'
5'--3'

miR157d: 3'-CACGAGAGATAGAAGACAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        reduced organ size in petals and stamens. reduced apical dominance

         abnormal petal (direct input), 
         short stamen (direct input), 
         loss of apical dominance (direct input), 
         short pedicel (direct input)


 and more...        		
       

       

        CRES-T phenotype from publication
        
loss of apical dominance, slow growth (PMID19880401)
        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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