Alias |
AtIDD8, NUC |
TF Classification |
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TAIR short description |
nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) |
TAIR annotation |
nutcracker (NUC); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: primary root apical meristem, stem vascular system, embryo, root, embryonic root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G03840.1); Has 52823 Blast hits to 19358 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 50211; Fungi - 300; Plants - 764; Viruses - 0; Other Eukaryotes - 1548 (source: NCBI BLink). (.1) |
Gene model |
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Entry clone (w/o stop) |
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External link |
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Gene Ontology (GO) |
(P) 10150: developmental processes |
->leaf senescence |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(P) 45893: other metabolic processes |
->positive regulation of transcription, DNA-templated |
(F) 46872: other binding |
->metal ion binding |
(P) 48364: developmental processes |
->root development |
(P) 48510: other biological processes |
->regulation of timing of transition from vegetative to reproductive phase |
(P) 48573: response to abiotic or biotic stimulus |
->photoperiodism, flowering |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
(F) 8270: other binding |
->zinc ion binding |
(P) 8356: other cellular processes |
->asymmetric cell division |
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miRNA/tasiRNA |
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Orthologs |
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Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
1 |
4 |
5 |
soybean |
1 |
|
1 |
2 |
4 |
rice |
1 |
|
|
|
1 |
sorghum |
|
|
1 |
|
1 |
physcomitrella |
|
|
|
|
|
Total |
2 |
|
3 |
6 |
11 |
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Repression motif |
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Repression motif in putative orthologs |
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Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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