fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G62000 (ORE14, HSS, ARF1-BP, ARF2)

Alias ORE14, HSS, ARF1-BP, ARF2
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / ETTIN/ARF3
AtTFDBARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
TAIR annotation Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. (.1.2.3.4)
Gene model
Gene model cDNA support
AT5G62000.3 179
AT5G62000.2 176
AT5G62000.1 149
AT5G62000.4 137
Entry clone (w/o stop) IE_0069
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10047: other biological processes ->fruit dehiscence
(P) 10150: developmental processes ->leaf senescence
(P) 10227: developmental processes ->floral organ abscission
(P) 1903288: other cellular processes ->positive regulation of potassium ion import
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: other metabolic processes ->negative regulation of transcription, DNA-templated
(P) 48481: developmental processes ->plant ovule development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 8285: other cellular processes ->negative regulation of cell proliferation
(P) 9734: other cellular processes ->auxin-activated signaling pathway
(P) 9737: other biological processes ->response to abscisic acid
(P) 9911: developmental processes ->positive regulation of flower development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR773: 3'-CCTCTGTTTTCGACCTTCGTTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 6 7
soybean 1 8 9
rice 1 2 3
sorghum 1 1
physcomitrella 1 1
Total 4 1 16 21
Repression motif 
QMIHSGLSLKLHESPK at 563/859 in AT5G62000.1
QMIHSGLSLKLHESPK at 563/859 in AT5G62000.2
QMIHSGLSLKLHESPK at 563/859 in AT5G62000.3
QMIHSGLSLKLHESPK at 563/853 in AT5G62000.4
Repression motif
in putative orthologs		 
SGVPSSLSLNLLDSNT at 556/858 in soybean Gm013593 (Type II)
KDDNYKLFGVSLFRN at 554/780 in poplar Pt010325 (Type II)
KDDNYKLFGVSLFRN at 573/799 in poplar Pt010324 (Type II)
PGVPSSLSLNLLDSNL at 549/851 in soybean Gm019793 (Type II)
SIMSPGLSLKLSESNS at 555/854 in poplar Pt023628 (Type Ia)
PGVPSSLSLNLLDSNL at 348/650 in soybean Gm019795 (Type II)
SGVPSSLSLNLLDSNT at 556/858 in soybean Gm013592 (Type II)
SGVPSSLSLNLLDSNT at 556/802 in soybean Gm013594 (Type II)
KDDNYKLFGVSLFRN at 573/804 in poplar Pt010323 (Type II)
PGVPSSLSLNLLDSNL at 457/759 in soybean Gm019794 (Type II)
KDDNYKLFGVSLFRN at 573/725 in poplar Pt010327 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project abnormal flower, sterile or low fertility (A20486-122)

abnormal flower, sterile or low fertility (A20484-36)

abnormal flower, sterile or low fertility (A20487-176)

abnormal flower, sterile or low fertility (A20486-124)

abnormal flower, sterile or low fertility (A20486-146)

abnormal flower, sterile or low fertility (A20487-183)

Phenotype in ornamental plants
Comment