fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G65210 (TGA1)

Alias TGA1
TF Classification
FioreDBbZIP (Click to show phylogenetic tree)
RARTFTGA3
AtTFDBbZIP
PlnTFDBbZIP (v3.0), bZIP (v1.0)
DATFbZIP
TAIR short description bZIP transcription factor family protein (.1.2.3.4.5.6)
TAIR annotation Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated. (.1), Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated. (.2), Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated. (.3), Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated. (.4), Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated. (.5), Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated. (.6)
Gene model
Gene model cDNA support
AT5G65210.1 53
AT5G65210.6 48
AT5G65210.3 44
AT5G65210.4 43
AT5G65210.2 43
AT5G65210.5 43
Entry clone (w/o stop) RE_0375
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42742: response to abiotic or biotic stimulus ->defense response to bacterium
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 5515: protein binding ->protein binding
(F) 5516: protein binding ->calmodulin binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN142: 3'-TTCATAGTTGTTCGCTTCAAAA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 12 13
soybean 1 26 27
rice 1 8 9
sorghum 1 5 6
physcomitrella 1 6 7
Total 5 57 62
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
QTTDQDLELKLLVEAG at 209/397 in rice Os019143 (Type II)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002325 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002325 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040102 (Type III)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002327 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002327 (Type III)
RIKLNQLELELQRARQ at 81/343 in physcomitrella Pp002326 (Type III)
SQGLEALQLSLSDTLS at 250/343 in physcomitrella Pp002326 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040103 (Type III)
QQAEDALSLGLDKLQQ at 267/370 in soybean Gm040104 (Type III)
RIKLNQLELELQRARQ at 81/342 in physcomitrella Pp002328 (Type III)
SQGLEALQLSLSDTLS at 249/342 in physcomitrella Pp002328 (Type III)
QQAEDALSLGLEKLQQ at 230/326 in soybean Gm014775 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        

         short pedicel (06515), 
         abnormal seedling (direct input), 
         short petiole (06515), 
         dwarf (direct input), 
         short silique (06515), 
         abnormal stem (06515), 
         wide leaf (06515)


 and more...        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         rough surface leaf 
         (A20270-119)
         

         
         

         dark green leaf 
         (A20270-149)
         

         
         

         dwarf, 
         rough surface leaf 
         (A20270-151)
         

         
         

         pale green leaf, 
         rough surface leaf, 
         narrow leaf, 
         bushy, 
         abnormal flower 
         (A20488-186)
         

         over-accumulated anthocyanin 
         (A20619-65)
         

         serrated leaf 
         (A20270-136)
         

         
         

         serrated leaf, 
         abnormal shaped leaf 
         (A20619-54)
         


        		
       

       

        Phenotype in ornamental plants


        
         

          Comment