fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT5G66300 (ANAC105, VND3)
Alias
ANAC105, VND3
TF Classification
FioreDB
NAC
(Click to show phylogenetic tree)
RARTF
NAC
/ CUP-SHAPED COTYLEDON2
AtTFDB
NAC
PlnTFDB
NAC
(v3.0), NAC (v1.0)
DATF
NAC
TAIR short description
VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1)
TAIR annotation
Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. (.1)
Gene model
Gene model
cDNA support
AT5G66300.1
5
Entry clone (w/o stop)
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(P) 1901348: other cellular processes
->positive regulation of secondary cell wall biogenesis
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(P) 48759: other cellular processes
->xylem vessel member cell differentiation
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent
->regulation of transcription, DNA-templated
(P) 71555: other cellular processes
->cell wall organization
(P) 7275: developmental processes
->multicellular organism development
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
11
12
soybean
1
13
14
rice
1
6
7
sorghum
1
5
6
physcomitrella
Total
4
35
39
Repression motif
Repression motif
in putative orthologs
PCKKE
IDLQYQIP
HDHFL at 214/370 in poplar
Pt023412
(Type III)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment