fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G67580 (ATTBP3, TRB2, ATTRB2)

Alias ATTBP3, TRB2, ATTRB2
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / ATR1
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATFMYB-related
TAIR short description TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
TAIR annotation Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. (.1), Encodes a telomeric DNA binding protein. In vitro, the protein preferentially binds double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. (.2)
Gene model
Gene model cDNA support
AT5G67580.1 45
AT5G67580.2 25
Entry clone (w/o stop) RE_1188
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 31627: cell organization and biogenesis ->telomeric loop formation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3691: DNA or RNA binding ->double-stranded telomeric DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42162: DNA or RNA binding ->telomeric DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(F) 43047: DNA or RNA binding ->single-stranded telomeric DNA binding
(P) 46686: other biological processes ->response to cadmium ion
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5730: nucleus ->nucleolus
(P) 6334: cell organization and biogenesis ->nucleosome assembly
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(C) 784: nucleus ->nuclear chromosome, telomeric region
(C) 785: other intracellular components ->chromatin
(C) 786: other intracellular components ->nucleosome
(P) 9651: response to stress ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9737: other biological processes ->response to abscisic acid
(P) 9739: other biological processes ->response to gibberellin
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR771: 3'-ACTCCCGATGGTGTCTCCGAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 6 7
rice
sorghum
physcomitrella
Total 2 9 11
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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