fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G37540 (LBD39)

Alias LBD39
TF Classification
FioreDBAS2 (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBLOB (v3.0)
DATFAS2
TAIR short description LOB domain-containing protein 39 (.1)
TAIR annotation LOB domain-containing protein 39 (LBD39); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 38 (TAIR:AT3G49940.1); Has 571 Blast hits to 570 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 571; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G37540.1 48
Entry clone (w/o stop) RE_03H06_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR8181: 3'-GACAGTGGGGGGGTGGGGGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 2 1 3
soybean 2 3 5
rice
sorghum
physcomitrella 1 2 3
Total 5 6 11
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
QTATTDLNLRLTPSFL at 180/243 in soybean Gm001959 (Type III)
KVQHNDLDLGLTPSFS at 178/238 in poplar Pt037620 (Type III)
QEQQPNLDLRLTPVFL at 180/230 in soybean Gm047285 (Type III)
GNGAEQLELDLTLKVK at 294/365 in physcomitrella Pp021737 (Type II)
VGSTEHLDLGLTLKVK at 288/356 in physcomitrella Pp032886 (Type III)
LQAQPNLDLRLTPVFS at 177/227 in soybean Gm011992 (Type II)
QTATTDLNLRLTPSFL at 177/240 in soybean Gm029866 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50101
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, 9 lines 
           no phenotype 
            
          

         

         

          Comment