fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G01720 (ATAF1, ANAC002)

Alias ATAF1, ANAC002
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
TAIR annotation Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA. (.1)
Gene model
Gene model cDNA support
AT1G01720.1 144
Entry clone (w/o stop) IE_06B03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9611: response to stress ->response to wounding
(P) 9788: other cellular processes ->negative regulation of abscisic acid-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR8182: 3'-TTAGTTGTCTTTGCGTTGTGTT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 9 1 11
rice 1 1 3 5
sorghum 1 1 3 5
physcomitrella 1 4 5
Total 4 15 11 30
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
NNDDYDLGLQLENAFD at 214/265 in soybean Gm015355 (Type II)
NNDDYDLGLQLENAFD at 244/295 in soybean Gm015354 (Type II)
PKWNDDLDLKLENAFD at 240/291 in soybean Gm010412 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(05Nov)

          
Plasmid construction -> The work interrupted(05Nov)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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