fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G34790 (WIP1, TT1)

Alias WIP1, TT1
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1)
TAIR annotation Encodes a zinc finger protein; involved in photomorphogenesis, flavonoid biosynthesis, flower and seed development. (.1)
Gene model
Gene model cDNA support
AT1G34790.1 7
Entry clone (w/o stop) IE_03F04
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9813: other metabolic processes ->flavonoid biosynthetic process
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 8 9
soybean 3 18 21
rice 1 7 8
sorghum 1 6 7
physcomitrella 1 1 2
Total 1 6 40 47
Repression motif 
NLNSNLDLNPNPLYAEE at 56/303 in AT1G34790.1
Repression motif
in putative orthologs		 
AEGDPMDLEAAAPTDDDA at 147/428 in sorghum Sb016295 (Type III)
GGGCRRLRLRLRGGRR at 199/489 in sorghum Sb023456 (Type III)
KTVTVALHLGLPRLDS at 22/203 in poplar Pt030771 (Type III)
AAVTVALHLGLPSTSD at 115/341 in soybean Gm030814 (Type III)
GSKAGSLMLRLPCYCC at 142/264 in soybean Gm055125 (Type III)
QALVLRLRLRLQAQAI at 339/583 in sorghum Sb032678 (Type III)
ETVTVALHLGLPSPCS at 112/336 in poplar Pt011936 (Type III)
TAVTVALHLGLPSTTT at 121/345 in soybean Gm041045 (Type III)
AAVTVALHLGLPSTSI at 114/341 in soybean Gm032862 (Type III)
ETVTVALHLGLPSTTA at 124/350 in soybean Gm038084 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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