fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G68480 (JAG)

Alias JAG
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTF
AtTFDBC2H2
PlnTFDB
DATFC2H2
TAIR short description JAGGED, C2H2 and C2HC zinc fingers superfamily protein (.1)
TAIR annotation Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development. (.1)
Gene model
Gene model cDNA support
AT1G68480.1 1
Entry clone (w/o stop) IE_08E07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10093: developmental processes ->specification of floral organ identity
(P) 10094: developmental processes ->specification of carpel identity
(P) 10097: developmental processes ->specification of stamen identity
(P) 10158: other cellular processes ->abaxial cell fate specification
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(P) 48440: developmental processes ->carpel development
(P) 48443: developmental processes ->stamen development
(P) 48653: developmental processes ->anther development
(C) 5634: nucleus ->nucleus
(P) 7275: developmental processes ->multicellular organism development
(F) 8270: other binding ->zinc ion binding
(P) 9908: developmental processes ->flower development
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean
rice 1 1
sorghum 1 1
physcomitrella
Total 3 3
Repression motif 
HEENYLDLNNLPDDFSK at 7/253 in AT1G68480.1
Repression motif
in putative orthologs		 
QEGSPLDLNNLPDEFGK at 12/263 in rice Os000268 (Type Ib)
HENNPLDLNNLPEDYSR at 24/285 in poplar Pt034323 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID50070 Torenia 35S:AtCDS-SRDX 2008-10-01 development bulk, not obtained      
Comment