Alias |
ATIDD4 |
TF Classification |
|
TAIR short description |
indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) |
TAIR annotation |
indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 51298 Blast hits to 20221 proteins in 333 species: Archae - 2; Bacteria - 165; Metazoa - 48118; Fungi - 358; Plants - 855; Viruses - 7; Other Eukaryotes - 1793 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_0393_x |
External link |
|
Gene Ontology (GO) |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46872: other binding |
->metal ion binding |
(P) 48364: developmental processes |
->root development |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
(P) 8356: other cellular processes |
->asymmetric cell division |
(C) 9507: chloroplast |
->chloroplast |
|
miRNA/tasiRNA |
Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
miRN150: 3'-GATAGTACCTCTTACTAGTTT-5' |
|
|
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
1 |
6 |
7 |
soybean |
1 |
|
|
6 |
7 |
rice |
|
|
|
|
|
sorghum |
|
|
1 |
|
1 |
physcomitrella |
|
|
|
|
|
Total |
1 |
|
2 |
12 |
15 |
|
Repression motif |
|
Repression motif in putative orthologs |
HHSLLSLSLSLHNLSL at 23/856 in sorghum Sb031033 (Type II)
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
|