fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G46770 (NST1, ANAC043, EMB2301)

Alias NST1, ANAC043, EMB2301
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
TAIR annotation NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop. (.1)
Gene model
Gene model cDNA support
AT2G46770.1 8
Entry clone (w/o stop) RE_0616_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10047: other biological processes ->fruit dehiscence
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45893: other cellular processes ->positive regulation of transcription, DNA-templated
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 9793: developmental processes ->embryo development ending in seed dormancy
(P) 9809: other cellular processes ->lignin biosynthetic process
(P) 9834: other cellular processes ->plant-type secondary cell wall biogenesis
(P) 9901: developmental processes ->anther dehiscence
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2 4
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella
Total 4 2 2 8
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        undehiscent anther due to lack of secondary wall thicknings in anther endothecium. ectopic secondary wall thickenings occur when over-expressed.

         sterile or low fertility (direct input), 
         anther indehiscent (direct input), 
         fragile stem (direct input)
        		
       

       

        CRES-T phenotype from publication
        
indehiscent silique (PMID18657234), fragile stem (PMID17237351), anther indehiscent, sterile or low fertility (PMID16214898)
        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment