fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G47090

Alias
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTF
AtTFDBC2H2
PlnTFDB
DATFC2H2
TAIR short description zinc ion binding;nucleic acid binding (.1.2)
TAIR annotation zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1); Has 6997 Blast hits to 1745 proteins in 389 species: Archae - 0; Bacteria - 1326; Metazoa - 1009; Fungi - 441; Plants - 119; Viruses - 26; Other Eukaryotes - 4076 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G47090.1 11
AT2G47090.2 10
Entry clone (w/o stop) IE_0036
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(C) 5634: nucleus ->nucleus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1
rice 1 1 2
sorghum
physcomitrella 1 1
Total 1 3 2 6
Repression motif 
SMAAVLDLRNSNPEPEPE at 722/766 in AT2G47090.1
SMAAVLDLRNSNPEPEPE at 699/743 in AT2G47090.2
Repression motif
in putative orthologs		 
SMAALLDLQNSEPDPRET at 776/819 in poplar Pt039819 (Type III)
SMAALLDLQSSDPDPHNT at 772/812 in poplar Pt017815 (Type II)
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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