Alias |
|
TF Classification |
FioreDB | C3HZnF (Click to show phylogenetic tree) |
RARTF | |
AtTFDB | |
PlnTFDB | C3H (v3.0), C3H (v1.0) |
DATF | C3H |
|
TAIR short description |
zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) |
TAIR annotation |
zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 1267 Blast hits to 1227 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 594; Fungi - 258; Plants - 154; Viruses - 158; Other Eukaryotes - 103 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
|
External link |
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Gene Ontology (GO) |
(P) 16567: other metabolic processes |
->protein ubiquitination |
(F) 16740: transferase activity |
->transferase activity |
(F) 3676: nucleic acid binding |
->nucleic acid binding |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 46872: other binding |
->metal ion binding |
(C) 5634: nucleus |
->nucleus |
(F) 8270: other binding |
->zinc ion binding |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
1 |
2 |
3 |
soybean |
|
|
1 |
3 |
4 |
rice |
|
|
1 |
|
1 |
sorghum |
|
|
1 |
1 |
2 |
physcomitrella |
|
|
1 |
|
1 |
Total |
|
|
5 |
6 |
11 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> not_yet |
Plasmid construction | -> not_yet |
Transformed | -> not_yet |
T1 seed harvested | -> not_yet |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
|