fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G42790 (AL3)

Alias AL3
TF Classification
FioreDBAlfin (Click to show phylogenetic tree)
RARTFAlfin-like
AtTFDBAlfin-like
PlnTFDBAlfin-like (v3.0), Alfin-like (v1.0)
DATFAlfin
TAIR short description alfin-like 3 (.1)
TAIR annotation AL3 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. (.1)
Gene model
Gene model cDNA support
AT3G42790.1 149
Entry clone (w/o stop) RE_03F04_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 16569: cell organization and biogenesis ->covalent chromatin modification
(F) 3677: DNA or RNA binding ->DNA binding
(F) 42393: protein binding ->histone binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 9 10
soybean 4 22 26
rice 1 8 9
sorghum 1 9 10
physcomitrella 1 6 3 10
Total 1 13 51 65
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
FLLHFTLALDLVSIEM at 121/335 in sorghum Sb024101 (Type III)
DEGGAGLGLGLEDEDE at 156/227 in soybean Gm039570 (Type III)
DEGGAGLGLGLEDEDE at 185/256 in soybean Gm039568 (Type II)
VISSRGLALALAGERS at 17/388 in sorghum Sb032260 (Type III)
DEGGAGLGLGLEDEDE at 174/245 in soybean Gm039569 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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