fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G53820

Alias
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description C2H2 and C2HC zinc fingers superfamily protein (.1)
TAIR annotation C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion, intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: telomerase activator1 (TAIR:AT3G09290.1); Has 810 Blast hits to 810 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 0; Plants - 763; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G53820.1 2
Entry clone (w/o stop) IE_01G01
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean
rice
sorghum
physcomitrella
Total 1 1
Repression motif 
SADVIDLELRLGLDPY at 123/142 in AT3G53820.1
Repression motif
in putative orthologs		 
ATSQAGLDLELRLGSE at 137/161 in poplar Pt044643 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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