fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G54220 (SGR1, SCR)

Alias SGR1, SCR
TF Classification
FioreDBGRAS (Click to show phylogenetic tree)
RARTFGRAS / SCARECROW
AtTFDBGRAS
PlnTFDBGRAS (v3.0), GRAS (v1.0)
DATFGRAS
TAIR short description SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
TAIR annotation Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. SCR appears to be a direct target of SHR. (.1)
Gene model
Gene model cDNA support
AT3G54220.1 76
Entry clone (w/o stop) RE_0900_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 48364: developmental processes ->root development
(P) 48366: developmental processes ->leaf development
(P) 51457: other cellular processes ->maintenance of protein location in nucleus
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 8356: other cellular processes ->asymmetric cell division
(P) 90610: other cellular processes ->bundle sheath cell fate specification
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9956: developmental processes ->radial pattern formation
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2 4
soybean 1 1 2 4
rice 1 1 1 3
sorghum 1 1
physcomitrella 1 1 2
Total 5 4 5 14
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
GHAPSGLSLDLDHVSN at 334/847 in poplar Pt005367 (Type II)
KRSIDNLQLSLEPADE at 279/755 in physcomitrella Pp001557 (Type II)
HASNSGLTLDLDNIVS at 273/803 in poplar Pt043556 (Type Ia)
KRTIDNLQLSLEPADE at 375/852 in physcomitrella Pp000890 (Type Ia)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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