fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G60390 (HAT3)

Alias HAT3
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description homeobox-leucine zipper protein 3 (.1)
TAIR annotation Encodes homeobox protein HAT3. (.1)
Gene model
Gene model cDNA support
AT3G60390.1 35
Entry clone (w/o stop) RE_0553_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5631: 3'-TTTTAATACAGGAAGGACGGT-5'
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 13 14
soybean 1 2 18 21
rice 1 4 5
sorghum 2 6 8
physcomitrella 1 3 4
Total 2 6 44 52
Repression motif 
SERDDGLGLSLSLSLG at 6/315 in AT3G60390.1
Repression motif
in putative orthologs		 
MVQKEDLGLSLSLNFP at 7/298 in soybean Gm011448 (Type III)
MELRLSLGEAAV at 2/377 in sorghum Sb015943 (Type III)
RAAVPELGLGLGVGIG at 22/377 in sorghum Sb015943 (Type III)
GEKDDGLGLGLSLKLG at 7/308 in soybean Gm018184 (Type Ia)
DLCNTGLGLGLGSFHA at 14/269 in poplar Pt040388 (Type III)
MELGLSLGDAAT at 2/374 in poplar Pt031227 (Type III)
GDKNDGLGLSLSLGYA at 7/295 in poplar Pt040049 (Type III)
HHQQPSLKLNLMPLAS at 27/295 in poplar Pt040049 (Type III)
MELGLSLGETMA at 2/369 in sorghum Sb005998 (Type III)
MAPQSLDLGLSLGLG at 5/285 in sorghum Sb002919 (Type III)
NKREMELGLSLGDAAT at 8/383 in poplar Pt022588 (Type III)
MELGLSLGDSSR at 2/384 in soybean Gm043292 (Type III)
MERQGLDLGLSLGLG at 5/256 in rice Os023513 (Type III)
EACITSLSLGLGIMGG at 10/226 in soybean Gm042437 (Type III)
DTSNTGLGLGLGLGLV at 10/305 in soybean Gm039487 (Type III)
MERVEDLGLSLSLSSS at 68/363 in sorghum Sb029730 (Type II)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011704 (Type III)
HLDDAGLALGLSLGGG at 13/501 in sorghum Sb021965 (Type III)
MERAEDLRLSLSLSSP at 7/247 in rice Os018327 (Type II)
MAGKEDLGLSLSLSVP at 7/302 in poplar Pt032091 (Type III)
QNQHSLQLNLMPSLV at 22/302 in poplar Pt032091 (Type III)
SEAEPSLTLGLSRESY at 62/305 in soybean Gm012051 (Type III)
MELALSLGDTSK at 2/344 in poplar Pt043918 (Type III)
GDKNDGLGLSLSLGFD at 7/298 in poplar Pt017318 (Type Ia)
HQQQPSLKLNLMPVPS at 28/298 in poplar Pt017318 (Type Ia)
MERQGLDLGLSLGLG at 5/256 in rice Os023514 (Type III)
MVQKEDLGLSLSLNFP at 7/296 in soybean Gm011449 (Type III)
MELALSLGDTPK at 2/280 in soybean Gm007056 (Type III)
DGDDNHLGLGLSLSLG at 88/511 in sorghum Sb021157 (Type II)
YCPSSCLGLDLSFFFA at 435/511 in sorghum Sb021157 (Type II)
DEQYGGLRLGLGLGLS at 15/311 in rice Os037033 (Type III)
MMDLGLSLGLGLASQ at 5/308 in rice Os023515 (Type III)
SEAEPSLTLGLSRESY at 67/312 in soybean Gm047225 (Type III)
MELALSLGDTPK at 2/270 in soybean Gm052144 (Type III)
ARRRCSLHLSLLRAHR at 244/292 in sorghum Sb021052 (Type III)
SEAEPSLTLGLSRESY at 67/310 in soybean Gm047226 (Type III)
PRQKEALALQLKLRPR at 93/192 in poplar Pt041657 (Type III)
DTSNTGLGLGLGLGLV at 10/309 in soybean Gm000037 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011705 (Type III)
MELALSLGDTSK at 2/309 in soybean Gm004319 (Type III)
MELALSLGDTSK at 2/294 in poplar Pt006139 (Type III)
TVEKEDLGLSLSLSFP at 7/285 in soybean Gm029715 (Type III)
QNPPTHLHLNLVSSSP at 23/285 in soybean Gm029715 (Type III)
TGFEPSLSLGLSAETY at 51/273 in poplar Pt037290 (Type III)
PPNEPSLTLGLSGESY at 56/283 in soybean Gm002000 (Type III)
PSKEPSLTLGLSGKGY at 55/283 in soybean Gm029825 (Type III)
MVQKEDLGLSLSLNFP at 7/299 in soybean Gm047093 (Type III)
MELALSLGDTSK at 2/327 in soybean Gm024629 (Type III)
KDDEFGLSLSLSLGGV at 9/289 in soybean Gm050338 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		—cA•¨ŠúAA•¨‘Ì‚ª¬‚³‚­—ΔZ‚Å—t‚ª‚»‚è‚©‚¦‚é(32/178), –{—t‚̐悽‚ñ‚ÍŠÛ‚¢‚ªAŒ`‚͍ג·‚­‚āA—ΔZ‚­‚Äbushy(27/72), ’¸‚½‚ñ‚̉Ԃª—Z‡(12/72), ‰Ô•Ù’Z‚¢(20/72), ‰ÔŒs‘½”(39/72), ‰ÔŒs‚̈ꕔ‚ªƒXƒYƒ‰ƒ“‚Ý‚½‚¢‚ȉԂ̂‚«•û(4/72), (phenotype_A20011:leaf_×‚¢E—ΔZEbushy/flower_‰Ô•Ù’Z/stem_‘½‚¢/’¸‰Ô—Z‡/•s–«)
over-accumulation of wax (A21460), narrow leaf (A20011, A21460), abnormal flower (A20011, A21460), dark green leaf (A20011, A21460), loss of apical dominance (A20011), abnormal leaf (A21460), abnormal petal (A20011), bushy (direct input, A20011), sterile or low fertility (A20011)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project abnormal leaf (A20271-154)

short pedicel, short stamen, fragile stem, sterile or low fertility (A20271-199)

narrow leaf, abnormal leaf (A20250-26)
hyponastic leaf (A20604-73)
hyponastic leaf (A20604-61)
narrow leaf, abnormal leaf (A20229-25)
Phenotype in ornamental plants
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