fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G60390 (HAT3)

Alias HAT3
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description homeobox-leucine zipper protein 3 (.1)
TAIR annotation Encodes homeobox protein HAT3. (.1)
Gene model
Gene model cDNA support
AT3G60390.1 35
Entry clone (w/o stop) RE_0553_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5631: 3'-TTTTAATACAGGAAGGACGGT-5'
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 13 14
soybean 1 2 18 21
rice 1 4 5
sorghum 2 6 8
physcomitrella 1 3 4
Total 2 6 44 52
Repression motif 
SERDDGLGLSLSLSLG at 6/315 in AT3G60390.1
Repression motif
in putative orthologs		 
EACITSLSLGLGIMGG at 10/226 in soybean Gm042437 (Type III)
MELALSLGDTSK at 2/327 in soybean Gm024629 (Type III)
KDDEFGLSLSLSLGGV at 9/289 in soybean Gm050338 (Type II)
MERAEDLRLSLSLSSP at 7/247 in rice Os018327 (Type II)
DLCNTGLGLGLGSFHA at 14/269 in poplar Pt040388 (Type III)
MERQGLDLGLSLGLG at 5/256 in rice Os023514 (Type III)
GDKNDGLGLSLSLGYA at 7/295 in poplar Pt040049 (Type III)
HHQQPSLKLNLMPLAS at 27/295 in poplar Pt040049 (Type III)
MELALSLGDTSK at 2/294 in poplar Pt006139 (Type III)
DGDDNHLGLGLSLSLG at 88/511 in sorghum Sb021157 (Type II)
YCPSSCLGLDLSFFFA at 435/511 in sorghum Sb021157 (Type II)
NKREMELGLSLGDAAT at 8/383 in poplar Pt022588 (Type III)
MMDLGLSLGLGLASQ at 5/308 in rice Os023515 (Type III)
DEQYGGLRLGLGLGLS at 15/311 in rice Os037033 (Type III)
MELALSLGDTPK at 2/270 in soybean Gm052144 (Type III)
MELALSLGDTSK at 2/344 in poplar Pt043918 (Type III)
SEAEPSLTLGLSRESY at 67/312 in soybean Gm047225 (Type III)
MELGLSLGDSSR at 2/384 in soybean Gm043292 (Type III)
DTSNTGLGLGLGLGLV at 10/309 in soybean Gm000037 (Type III)
SEAEPSLTLGLSRESY at 67/310 in soybean Gm047226 (Type III)
MELALSLGDTPK at 2/280 in soybean Gm007056 (Type III)
MERVEDLGLSLSLSSS at 68/363 in sorghum Sb029730 (Type II)
GDKNDGLGLSLSLGFD at 7/298 in poplar Pt017318 (Type Ia)
HQQQPSLKLNLMPVPS at 28/298 in poplar Pt017318 (Type Ia)
TGFEPSLSLGLSAETY at 51/273 in poplar Pt037290 (Type III)
MELGLSLGETMA at 2/369 in sorghum Sb005998 (Type III)
PSKEPSLTLGLSGKGY at 55/283 in soybean Gm029825 (Type III)
MVQKEDLGLSLSLNFP at 7/299 in soybean Gm047093 (Type III)
MAGKEDLGLSLSLSVP at 7/302 in poplar Pt032091 (Type III)
QNQHSLQLNLMPSLV at 22/302 in poplar Pt032091 (Type III)
GEKDDGLGLGLSLKLG at 7/308 in soybean Gm018184 (Type Ia)
ARRRCSLHLSLLRAHR at 244/292 in sorghum Sb021052 (Type III)
PPNEPSLTLGLSGESY at 56/283 in soybean Gm002000 (Type III)
MELRLSLGEAAV at 2/377 in sorghum Sb015943 (Type III)
RAAVPELGLGLGVGIG at 22/377 in sorghum Sb015943 (Type III)
DTSNTGLGLGLGLGLV at 10/305 in soybean Gm039487 (Type III)
MAPQSLDLGLSLGLG at 5/285 in sorghum Sb002919 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011704 (Type III)
PRQKEALALQLKLRPR at 93/192 in poplar Pt041657 (Type III)
MVQKEDLGLSLSLNFP at 7/298 in soybean Gm011448 (Type III)
HLDDAGLALGLSLGGG at 13/501 in sorghum Sb021965 (Type III)
SEAEPSLTLGLSRESY at 62/305 in soybean Gm012051 (Type III)
TVEKEDLGLSLSLSFP at 7/285 in soybean Gm029715 (Type III)
QNPPTHLHLNLVSSSP at 23/285 in soybean Gm029715 (Type III)
MVQKEDLGLSLSLNFP at 7/296 in soybean Gm011449 (Type III)
MERQGLDLGLSLGLG at 5/256 in rice Os023513 (Type III)
MELALSLGDTSK at 2/309 in soybean Gm004319 (Type III)
MELGLSLGDAAT at 2/374 in poplar Pt031227 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011705 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		—cA•¨ŠúAA•¨‘Ì‚ª¬‚³‚­—ΔZ‚Å—t‚ª‚»‚è‚©‚¦‚é(32/178), –{—t‚̐悽‚ñ‚ÍŠÛ‚¢‚ªAŒ`‚͍ג·‚­‚āA—ΔZ‚­‚Äbushy(27/72), ’¸‚½‚ñ‚̉Ԃª—Z‡(12/72), ‰Ô•Ù’Z‚¢(20/72), ‰ÔŒs‘½”(39/72), ‰ÔŒs‚̈ꕔ‚ªƒXƒYƒ‰ƒ“‚Ý‚½‚¢‚ȉԂ̂‚«•û(4/72), (phenotype_A20011:leaf_×‚¢E—ΔZEbushy/flower_‰Ô•Ù’Z/stem_‘½‚¢/’¸‰Ô—Z‡/•s–«)
abnormal flower (A20011, A21460), loss of apical dominance (A20011), dark green leaf (A20011, A21460), over-accumulation of wax (A21460), abnormal leaf (A21460), narrow leaf (A20011, A21460), abnormal petal (A20011), sterile or low fertility (A20011), bushy (direct input, A20011)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project hyponastic leaf (A20604-73)
narrow leaf, abnormal leaf (A20229-25)
hyponastic leaf (A20604-61)
short pedicel, short stamen, fragile stem, sterile or low fertility (A20271-199)

abnormal leaf (A20271-154)

narrow leaf, abnormal leaf (A20250-26)
Phenotype in ornamental plants
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